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| | 1. |
1990 Dec |
Evidence for horizontal transmission of the mobile element jockey between distant Drosophila species.
Mizrokhi, Mazo
Proc Natl Acad Sci U S A 1990 Dec;87(23):9216-9220.
Abstract
We addressed the possibility of the horizontal transfer of long interspersed element (LINE)-like mobile elements by studying the distribution of the Drosophila melanogaster LINE-like element jockey in different Drosophila species. Outside the D. melanogaster group jockey was detected only in the distantly related species Drosophila funebris. Cloning and sequencing of this element from D. funebris revealed the existence of the two open reading frames highly similar to those of jockey from D. melanogaster. Elements from both species are transcriptionally active and contain in their promoter regions a conserved sequence important for its activity. The high degree of similarity between the D. melanogaster and the D. funebris jockey and the absence of jockey from other sibling species of the D. funebris group provide evidence for the horizontal transmission of jockey into D. funebris.
[Pubmed: 1701254]
| | 2. |
1972 Mar |
Intergroup Phylogenies in Drosophila as Determined by Comparisons of Salivary Banding Patterns
Stalker
Genetics 1972 Mar;70(3):457-474.
Abstract
A salivary gland chromosome phylogeny is presented which summarizes the evolutionary relationships of twenty-two species belonging to the sub-genus Drosophila, and members of the twelve species groups: D. melanica, D. repleta, D. carbonaria, D. polychaeta, D. annulimana, D. robusta, D. carsoni, D. virilis, D. funebris and the "picture-wing," D. mimica and D. crassifemur groups (of Hawaii).—Photographic salivary chromosome maps were prepared for all twenty-two species studied. While the chromosomes of different species belonging to the same group can usually be homologized almost completely, so that construction of intragroup phylogenies is easy, chromosomes of members of different groups are so modified structurally that in most cases only short sections can be fully homologized, and these in only one or two chromosome elements.—Broadly homologous chromosome elements were compared for three species at a time, and on the basis of overlapping homologous sections, or overlapping inversions included within homologous sections, the trio of chromosomes, and the species to which they belonged can often be arranged in a two-step phylogenetic series. Detection of many such ordered trios permits construction of a single phylogenetic scheme encompassing all species.—D. nigromelanica, of the D. melanica group is found to be chromosomally intermediate between the rest of its group and the species belonging to other groups, suggesting that it is the most nearly ancestral member of its group. When trios of species including D. nigromelanica and members of two other species groups are compared, it is found that in twelve of fourteen such comparisons the chromosomes of D. nigromelanica are structurally intermediate between those of the members of the other two species groups, indicating the central position of D. nigromelanica in the phylogeny as a whole.—Available cytological evidence indicates that among the nine continental groups studied, it is the D. robusta group which is chromosomally closest to the Hawaiian "picture-wing" groups. Among the members of the Hawaiian groups it is D. primaeva and D. attigua which are found to be closest to the continental species. This finding tends to confirm the earlier conclusion of Carson and Stalker, based on different evidence, that the above two species were in an ancestral position in the Hawaiian phylogeny.—The relationship of the D. robusta and D. melanica groups demonstrated in this paper, the phylogenies within each of these two groups earlier worked out by Narayanan and by Stalker, and the present geographical distributions of the species within them, require that at least three Asiatic–New World migrations must have occurred during the evolution of the two groups.
[Pubmed: 5024716]
| | 3. |
1990 Feb |
Evidence for Horizontal Transmission of the P Transposable Element between Drosophila Species
Daniels, Peterson, Strausbaugh, Kidwell, Chovnick
Genetics 1990 Feb;124(2):339-355.
Abstract
Several studies have suggested that P elements have rapidly spread through natural populations of Drosophila melanogaster within the last four decades. This observation, together with the observation that P elements are absent in the other species of the melanogaster subgroup, has lead to the suggestion that P elements may have entered the D. melanogaster genome by horizontal transmission from some more distantly related species. In an effort to identify the potential donor in the horizontal transfer event, we have undertaken an extensive survey of the genus Drosophila using Southern blot analysis. The results showed that P-homologous sequences are essentially confined to the subgenus Sophophora. The strongest P hybridization occurs in species from the closely related willistoni and saltans groups. The D. melanogaster P element is most similar to the elements from the willistoni group. A wild-derived strain of D. willistoni was subsequently selected for a more comprehensive molecular examination. As part of the analysis, a complete P element was cloned and sequenced from this line. Its nucleotide sequence was found to be identical to the D. melanogaster canonical P, with the exception of a single base substitution at position 32. When the cloned element was injected into D. melanogaster embryos, it was able to both promote transposition of a coinjected marked transposon and induce singed-weak mutability, thus demonstrating its ability to function as an autonomous element. The results of this study suggest that D. willistoni may have served as the donor species in the horizontal transfer of P elements to D. melanogaster.
[Pubmed: 2155157]
| | 4. |
2009 Oct 26 |
A novel morphometry-based protocol of automated video-image analysis for species recognition and activity rhythms monitoring in deep-sea fauna.
Aguzzi J, Costa C, Fujiwara Y, Iwase R, Ramirez-Llorda E, Menesatti P
Sensors (Basel). 2009;9(11):8438-55. Epub 2009 Oct 26.
Abstract
The understanding of ecosystem dynamics in deep-sea areas is to date limited by technical constraints on sampling repetition. We have elaborated a morphometry-based protocol for automated video-image analysis where animal movement tracking (by frame subtraction) is accompanied by species identification from animals' outlines by Fourier Descriptors and Standard K-Nearest Neighbours methods. One-week footage from a permanent video-station located at 1,100 m depth in Sagami Bay (Central Japan) was analysed. Out of 150,000 frames (1 per 4 s), a subset of 10.000 was analyzed by a trained operator to increase the efficiency of the automated procedure. Error estimation of the automated and trained operator procedure was computed as a measure of protocol performance. Three displacing species were identified as the most recurrent: Zoarcid fishes (eelpouts), red crabs (Paralomis multispina), and snails (Buccinum soyomaruae). Species identification with KNN thresholding produced better results in automated motion detection. Results were discussed assuming that the technological bottleneck is to date deeply conditioning the exploration of the deep-sea.
[Pubmed: 22291517]
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